Software
Any available software downloads are below:
MKTest Version 2.0
This software implements various extensions of the McDonald-Kreitman test, often used to estimate the contribution of positive natural selection to long-term molecular evolution. The software including maximum likelihood methods that allow for formal comparison of different classes of locus. Details can be found in Welch (2006), Obbard et al. (2009), and in the documentation with the software.
BEAST
Some recent publications have involved alterations to the BEAST package. Full details and downloads can be found here.
